Sfoglia per Autore
LTR retrotransposons show low levels of unequal recombination and high rates of intraelement gene conversion in large plant genomes.
2017-01-01 Cossu, Rosa Maria; Casola, Claudio; Giacomello, Stefania; Vidalis, Amaryllis; Scofield, Douglas; Zuccolo, Andrea
Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza
2018-01-01 Stein, Joshua C.; Yu, Yeisoo; Copetti, Dario; Zwickl, Derrick J.; Zhang, Li; Zhang, Chengjun; Chougule, Kapeel; Gao, Dongying; Iwata, Aiko; Luis Goicoechea, Jose; Wei, Sharon; Wang, Jun; Liao, Yi; Wang, Muhua; Jacquemin, Julie; Becker, Claude; Kudrna, Dave; Zhang, Jianwei; Londono, Carlos E. M.; Song, Xiang; Lee, Seunghee; Sanchez, Paul; Zuccolo, Andrea; Ammiraju, Jetty S. S.; Talag, Jayson; Danowitz, Ann; Rivera, Luis F.; Gschwend, Andrea R.; Noutsos, Christos; Wu, Cheng-chieh; Kao, Shu-min; Zeng, Jhih-wun; Wei, Fu-jin; Zhao, Qiang; Feng, Qi; El Baidouri, Moaine; Carpentier, Marie-Christine; Lasserre, Eric; Cooke, Richard; da Rosa Farias, Daniel; Carlos da Maia, Luciano; dos Santos, Railson S.; Nyberg, Kevin G.; Mcnally, Kenneth L.; Mauleon, Ramil; Alexandrov, Nickolai; Schmutz, Jeremy; Flowers, Dave; Fan, Chuanzhu; Weigel, Detlef; Jena, Kshirod K.; Wicker, Thomas; Chen, Mingsheng; Han, Bin; Henry, Robert; Hsing, Yue-ie C.; Kurata, Nori; Costa de Oliveira, Antonio; Panaud, Olivier; Jackson, Scott A.; Machado, Carlos A.; Sanderson, Michael J.; Long, Manyuan; Wing, Doreen Ware & Rod A.
Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen.
2018-01-01 Lin, Yc; Wang, J; Delhomme, N; Schiffthaler, B; Sundström, G; Zuccolo, A; Nystedt, B; Hvidsten, Tr; de la Torre, A; Cossu, Rm; Hoeppner, Mp; Lantz, H; Scofield, Dg; Zamani, N; Johansson, A; Mannapperuma, C; Robinson, Km; Mähler, N; Leitch, Ij; Pellicer, J; Park, Ej; Van Montagu, M; Van de Peer, Y; Grabherr, M; Jansson, S; Ingvarsson, Pk; Street, Nr
Epigenetic patterns within the haplotype phased fig (Ficus carica L.) genome
2019-01-01 Usai, G.; Mascagni, F.; Giordani, T.; Vangelisti, A.; Bosi, E.; Zuccolo, A.; Ceccarelli, M.; King, R.; Hassani‐pak, K.; Zambrano, L. S.; Cavallini, A.; Natali, L.
Transposable Elements in Spruce
2020-01-01 Marturano, Giovanni; Canovi, Camilla; Rossi, Federico; Zuccolo, Andrea
A draft genome of sweet cherry (Prunus avium L.) reveals genome-wide and local effects of domestication”
2020-01-01 Pinosio, S.; Marroni, F.; Zuccolo, A.; Vitulo, N.; Mariette, S.; Sonnante, G.; Aravanopoulos, F. A.; Ganopoulos, I.; Palasciano, M.; Vidotto, M.; Magris, G.; Iezzoni, A.; Vendramin, G. G.; Morgante, M.
A platinum standard pan-genome resource that represents the population structure of Asian rice
2020-01-01 Zhou, Y.; Chebotarov, D.; Kudrna, D.; Llaca, V.; Lee, S.; Rajasekar, S.; Mohammed, N.; Al-Bader, N.; Sobel-Sorenson, C.; Parakkal, P.; Arbelaez, L. J.; Franco, N.; Alexandrov, N.; Sackville Hamilton, N. R.; Leung, H.; Mauleon, R.; Lorieux, M.; Zuccolo, A.; Mcnally, K.; Zhang, J.; Wing, R. A.
Potential of Platinum Standard Reference Genomes to Exploit Natural Variation in the Wild Relatives of Rice
2020-01-01 Mussurova, Saule; Al-Bader, Noor; Zuccolo, Andrea; Wing, Rod A.
The Chinese pine genome and methylome unveil key features of conifer evolution
2021-01-01 Niu, Shihui; Li, Jiang; Bo, Wenhao; Yang, Weifei; Zuccolo, Andrea; Giacomello, Stefania; Chen, Xi; Han, Fangxu; Yang, Junhe; Song, Yitong; Nie, Yumeng; Zhou, Biao; Wang, Peiyi; Zuo, Quan; Zhang, Hui; Ma, Jingjing; Wang, Jun; Wang, Lvji; Zhu, Qianya; Zhao, Huanhuan; Liu, Zhanmin; Zhang, Xuemei; Liu, Tao; Pei, Surui; Li, Zhimin; Hu, Yao; Yang, Yehui; Li, Wenzhao; Zan, Yanjun; Zhou, Linghua; Lin, Jinxing; Yuan, Tongqi; Li, Wei; Li, Yue; Wei, Hairong; X Wu, Harry
Two Gap-free Reference Genomes and a Global View of the Centromere Architecture in Rice
2021-01-01 SongWen-Zhao, Jia-Ming; Xie, ; Wang, Shuo; Guo, Yi-Xiong; Koo, Dal-Hoe; Davekudrna, ; Gong, Chenbo; HuangJia-Wu, Yicheng; Zhang, Fengwenhui; Zhou, Yong; Zuccolo, Andrea; Long, Evan; Lee, Seunghee; Talag, Jayson; ZhouXi-Tong, Run; Yuan, Zhudaojun; Udal, Joshua; Xie, Weibo; Wing, Rod A.; Zhang, Qifa; Poland, Jesse; Zhang, Jianwei; Chen, Ling-Ling
A route to de novo domestication of wild allotetraploid rice
2021-01-01 Yu, Hong; Lin, Tao; Meng, Xiangbing; Du, Huilong; Zhang, Jingkun; Liu, Guifu; Chen, Mingjiang; Jing, Yanhui; Kou, Liquan; Li, Xiuxiu; Gao, Qiang; Liang, Yan; Liu, Xiangdong; Fan, Zhilan; Liang, Yuntao; Cheng, Zhukuan; Chen, Mingsheng; Tian, Zhixi; Wang, Yonghong; Chu, Chengcai; Zuo, Jianru; Wan, Jianmin; Qian, Qian; Han, Bin; Zuccolo, Andrea; Wing, Rod A.; Gao, Caixia; Liang, Chengzhi; Li, Jiayang
The International Oryza Map Alignment Project (IOMAP): The Americas – Past achievements and future directions.
2022-01-01 Alsantely, A.; Gutaker, R.; Navarrete Rodríguez, M. E.; Arrietaespinoza, G.; Fuchs, E. J.; Costa de Oliveira, A.; Tohme, J.; Zuccolo, A.; Wing, R. A.; Fornasiero, A.
Genome-wide identification and characterisation of exapted transposable elements in the large genome of sunflower (Helianthus annuus L.)
2022-01-01 Ventimiglia, Maria; Marturano, Giovanni; Vangelisti, Alberto; Usai, Gabriele; Simoni, Samuel; Cavallini, Andrea; Giordani, Tommaso; Natali, Lucia; Zuccolo, Andrea; Mascagni, Flavia
Pan-genome inversion index reveals evolutionary insights into the subpopulation structure of Asian rice
2023-01-01 Zhou, Y; Yu, Z; Chebotarov, D; Chougule, K; Lu, Z; Rivera, Lf; Kathiresan, N; Al-Bader, N; Mohammed, N; Alsantely, A; Mussurova, S; Santos, J; Thimma, M; Troukhan, M; Fornasiero, A; Green, Cd; Copetti, D; Kudrna, D; Llaca, V; Lorieux, M; Zuccolo, A; Ware, D; Mcnally, K; Zhang, J; Wing, Ra
Multi-omics resources for targeted agronomic improvement of pigmented rice
2023-01-01 Sedeek, Khalid; Zuccolo, Andrea; Fornasiero, Alice; Weber, Annika M.; Sanikommu, Krishnaveni; Sampathkumar, Sangeetha; Rivera, Luis F.; Butt, Haroon; Mussurova, Saule; Alhabsi, Abdulrahman; Nurmansyah, Nurmansyah; Ryan, Elizabeth P.; Wing, Rod A.; Mahfouz, Magdy M.
The gyrfalcon (Falco rusticolus) genome
2023-01-01 Zuccolo, Andrea; Mfarrej, Sara; Celii, Mirko; Mussurova, Saule; F Rivera, Luis; Llaca, Victor; Mohammed, Nahed; Pain, Arnab; Fahad Alrefaei, Abdulmajeed; Fahad Alrefaei, Abdulwahed; A Wing, Rod
A high-performance computational workflow to accelerate GATK SNP detection across a 25-genome dataset
2024-01-01 Zhou, Y.; Kathiresan, N.; Yu, Z.; Rivera, L. F.; Yang, Y.; Thimma, M.; Manickam, K.; Chebotarov, D.; Mauleon, R.; Chougule, K.; Wei, S.; Gao, T.; Green, C. D.; Zuccolo, A.; Xie, W.; Ware, D.; Zhang, J.; Mcnally, K. L.; Wing, R. A.
Multitrait engineering of Hassawi red rice for sustainable cultivation
2024-01-01 Sedeek, Khalid; Mohammed, Nahed; Zhou, Yong; Zuccolo, Andrea; Sanikommu, Krishnaveni; Kantharajappa, Sunitha; Al-Bader, Noor; Tashkandi, Manal; Wing, Rod A.; Mahfouz, Magdy M.
| Titolo | Data di pubblicazione | Autore(i) | File |
|---|---|---|---|
| LTR retrotransposons show low levels of unequal recombination and high rates of intraelement gene conversion in large plant genomes. | 1-gen-2017 | Cossu, Rosa Maria; Casola, Claudio; Giacomello, Stefania; Vidalis, Amaryllis; Scofield, Douglas; Zuccolo, Andrea | |
| Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza | 1-gen-2018 | Stein, Joshua C.; Yu, Yeisoo; Copetti, Dario; Zwickl, Derrick J.; Zhang, Li; Zhang, Chengjun; Chougule, Kapeel; Gao, Dongying; Iwata, Aiko; Luis Goicoechea, Jose; Wei, Sharon; Wang, Jun; Liao, Yi; Wang, Muhua; Jacquemin, Julie; Becker, Claude; Kudrna, Dave; Zhang, Jianwei; Londono, Carlos E. M.; Song, Xiang; Lee, Seunghee; Sanchez, Paul; Zuccolo, Andrea; Ammiraju, Jetty S. S.; Talag, Jayson; Danowitz, Ann; Rivera, Luis F.; Gschwend, Andrea R.; Noutsos, Christos; Wu, Cheng-chieh; Kao, Shu-min; Zeng, Jhih-wun; Wei, Fu-jin; Zhao, Qiang; Feng, Qi; El Baidouri, Moaine; Carpentier, Marie-Christine; Lasserre, Eric; Cooke, Richard; da Rosa Farias, Daniel; Carlos da Maia, Luciano; dos Santos, Railson S.; Nyberg, Kevin G.; Mcnally, Kenneth L.; Mauleon, Ramil; Alexandrov, Nickolai; Schmutz, Jeremy; Flowers, Dave; Fan, Chuanzhu; Weigel, Detlef; Jena, Kshirod K.; Wicker, Thomas; Chen, Mingsheng; Han, Bin; Henry, Robert; Hsing, Yue-ie C.; Kurata, Nori; Costa de Oliveira, Antonio; Panaud, Olivier; Jackson, Scott A.; Machado, Carlos A.; Sanderson, Michael J.; Long, Manyuan; Wing, Doreen Ware & Rod A. | |
| Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen. | 1-gen-2018 | Lin, Yc; Wang, J; Delhomme, N; Schiffthaler, B; Sundström, G; Zuccolo, A; Nystedt, B; Hvidsten, Tr; de la Torre, A; Cossu, Rm; Hoeppner, Mp; Lantz, H; Scofield, Dg; Zamani, N; Johansson, A; Mannapperuma, C; Robinson, Km; Mähler, N; Leitch, Ij; Pellicer, J; Park, Ej; Van Montagu, M; Van de Peer, Y; Grabherr, M; Jansson, S; Ingvarsson, Pk; Street, Nr | |
| Epigenetic patterns within the haplotype phased fig (Ficus carica L.) genome | 1-gen-2019 | Usai, G.; Mascagni, F.; Giordani, T.; Vangelisti, A.; Bosi, E.; Zuccolo, A.; Ceccarelli, M.; King, R.; Hassani‐pak, K.; Zambrano, L. S.; Cavallini, A.; Natali, L. | |
| Transposable Elements in Spruce | 1-gen-2020 | Marturano, Giovanni; Canovi, Camilla; Rossi, Federico; Zuccolo, Andrea | |
| A draft genome of sweet cherry (Prunus avium L.) reveals genome-wide and local effects of domestication” | 1-gen-2020 | Pinosio, S.; Marroni, F.; Zuccolo, A.; Vitulo, N.; Mariette, S.; Sonnante, G.; Aravanopoulos, F. A.; Ganopoulos, I.; Palasciano, M.; Vidotto, M.; Magris, G.; Iezzoni, A.; Vendramin, G. G.; Morgante, M. | |
| A platinum standard pan-genome resource that represents the population structure of Asian rice | 1-gen-2020 | Zhou, Y.; Chebotarov, D.; Kudrna, D.; Llaca, V.; Lee, S.; Rajasekar, S.; Mohammed, N.; Al-Bader, N.; Sobel-Sorenson, C.; Parakkal, P.; Arbelaez, L. J.; Franco, N.; Alexandrov, N.; Sackville Hamilton, N. R.; Leung, H.; Mauleon, R.; Lorieux, M.; Zuccolo, A.; Mcnally, K.; Zhang, J.; Wing, R. A. | |
| Potential of Platinum Standard Reference Genomes to Exploit Natural Variation in the Wild Relatives of Rice | 1-gen-2020 | Mussurova, Saule; Al-Bader, Noor; Zuccolo, Andrea; Wing, Rod A. | |
| The Chinese pine genome and methylome unveil key features of conifer evolution | 1-gen-2021 | Niu, Shihui; Li, Jiang; Bo, Wenhao; Yang, Weifei; Zuccolo, Andrea; Giacomello, Stefania; Chen, Xi; Han, Fangxu; Yang, Junhe; Song, Yitong; Nie, Yumeng; Zhou, Biao; Wang, Peiyi; Zuo, Quan; Zhang, Hui; Ma, Jingjing; Wang, Jun; Wang, Lvji; Zhu, Qianya; Zhao, Huanhuan; Liu, Zhanmin; Zhang, Xuemei; Liu, Tao; Pei, Surui; Li, Zhimin; Hu, Yao; Yang, Yehui; Li, Wenzhao; Zan, Yanjun; Zhou, Linghua; Lin, Jinxing; Yuan, Tongqi; Li, Wei; Li, Yue; Wei, Hairong; X Wu, Harry | |
| Two Gap-free Reference Genomes and a Global View of the Centromere Architecture in Rice | 1-gen-2021 | SongWen-Zhao, Jia-Ming; Xie, ; Wang, Shuo; Guo, Yi-Xiong; Koo, Dal-Hoe; Davekudrna, ; Gong, Chenbo; HuangJia-Wu, Yicheng; Zhang, Fengwenhui; Zhou, Yong; Zuccolo, Andrea; Long, Evan; Lee, Seunghee; Talag, Jayson; ZhouXi-Tong, Run; Yuan, Zhudaojun; Udal, Joshua; Xie, Weibo; Wing, Rod A.; Zhang, Qifa; Poland, Jesse; Zhang, Jianwei; Chen, Ling-Ling | |
| A route to de novo domestication of wild allotetraploid rice | 1-gen-2021 | Yu, Hong; Lin, Tao; Meng, Xiangbing; Du, Huilong; Zhang, Jingkun; Liu, Guifu; Chen, Mingjiang; Jing, Yanhui; Kou, Liquan; Li, Xiuxiu; Gao, Qiang; Liang, Yan; Liu, Xiangdong; Fan, Zhilan; Liang, Yuntao; Cheng, Zhukuan; Chen, Mingsheng; Tian, Zhixi; Wang, Yonghong; Chu, Chengcai; Zuo, Jianru; Wan, Jianmin; Qian, Qian; Han, Bin; Zuccolo, Andrea; Wing, Rod A.; Gao, Caixia; Liang, Chengzhi; Li, Jiayang | |
| The International Oryza Map Alignment Project (IOMAP): The Americas – Past achievements and future directions. | 1-gen-2022 | Alsantely, A.; Gutaker, R.; Navarrete Rodríguez, M. E.; Arrietaespinoza, G.; Fuchs, E. J.; Costa de Oliveira, A.; Tohme, J.; Zuccolo, A.; Wing, R. A.; Fornasiero, A. | |
| Genome-wide identification and characterisation of exapted transposable elements in the large genome of sunflower (Helianthus annuus L.) | 1-gen-2022 | Ventimiglia, Maria; Marturano, Giovanni; Vangelisti, Alberto; Usai, Gabriele; Simoni, Samuel; Cavallini, Andrea; Giordani, Tommaso; Natali, Lucia; Zuccolo, Andrea; Mascagni, Flavia | |
| Pan-genome inversion index reveals evolutionary insights into the subpopulation structure of Asian rice | 1-gen-2023 | Zhou, Y; Yu, Z; Chebotarov, D; Chougule, K; Lu, Z; Rivera, Lf; Kathiresan, N; Al-Bader, N; Mohammed, N; Alsantely, A; Mussurova, S; Santos, J; Thimma, M; Troukhan, M; Fornasiero, A; Green, Cd; Copetti, D; Kudrna, D; Llaca, V; Lorieux, M; Zuccolo, A; Ware, D; Mcnally, K; Zhang, J; Wing, Ra | |
| Multi-omics resources for targeted agronomic improvement of pigmented rice | 1-gen-2023 | Sedeek, Khalid; Zuccolo, Andrea; Fornasiero, Alice; Weber, Annika M.; Sanikommu, Krishnaveni; Sampathkumar, Sangeetha; Rivera, Luis F.; Butt, Haroon; Mussurova, Saule; Alhabsi, Abdulrahman; Nurmansyah, Nurmansyah; Ryan, Elizabeth P.; Wing, Rod A.; Mahfouz, Magdy M. | |
| The gyrfalcon (Falco rusticolus) genome | 1-gen-2023 | Zuccolo, Andrea; Mfarrej, Sara; Celii, Mirko; Mussurova, Saule; F Rivera, Luis; Llaca, Victor; Mohammed, Nahed; Pain, Arnab; Fahad Alrefaei, Abdulmajeed; Fahad Alrefaei, Abdulwahed; A Wing, Rod | |
| A high-performance computational workflow to accelerate GATK SNP detection across a 25-genome dataset | 1-gen-2024 | Zhou, Y.; Kathiresan, N.; Yu, Z.; Rivera, L. F.; Yang, Y.; Thimma, M.; Manickam, K.; Chebotarov, D.; Mauleon, R.; Chougule, K.; Wei, S.; Gao, T.; Green, C. D.; Zuccolo, A.; Xie, W.; Ware, D.; Zhang, J.; Mcnally, K. L.; Wing, R. A. | |
| Multitrait engineering of Hassawi red rice for sustainable cultivation | 1-gen-2024 | Sedeek, Khalid; Mohammed, Nahed; Zhou, Yong; Zuccolo, Andrea; Sanikommu, Krishnaveni; Kantharajappa, Sunitha; Al-Bader, Noor; Tashkandi, Manal; Wing, Rod A.; Mahfouz, Magdy M. |
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