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Co-variation in frequencies of substitution, deletion, transposition and recombination during eutherian evolution 1-gen-2003 Hardison, Rc; Roskin, Km; Yang, S; Diekhans, M; Kent, Wj; Weber, R; Elnitski, L; Li, J; O’Connor, M; Kolbe, D; Schwartz, S; Furey, Ts; Whelan, S; Goldman, N; Smit, A; Miller, W; Chiaromonte, Francesca; Haussler, D.
Distinguishing regulatory DNA from neutral sites 1-gen-2003 Elnitski, L; Hardison, Rc; Li, J; Yang, S; Kolbe, D; Eswara, P; O’Connor, M; Schwartz, S; Miller, W; Chiaromonte, Francesca
Dynamics of the Epigenetic Landscape During Erythroid Differentiation after GATA1 Restoration 1-gen-2011 Wu, W; Cheng, Y; Keller, Ca; Kumar, Sa; Ernst, J; Mishra, T; Morrissey, C; Dorman, Cm; Chen, Kb; Drautz, D; Giardine, B; Shibata, Y; Song, L; Crawford, Ge; Furey, Ts; Kellis, M; Miller, W; Taylor, J.; Schuster, Sc; Zhang, Y; Chiaromonte, Francesca; Blobel, Gl; Weiss, Mj; Hardison, Rc
Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications and mRNA expression 1-gen-2009 Cheng, Y; Wu, W; Kumar, Sa; Yu, D; Deng, W; Tripic, T; King, Dc; Chen, Kb; Zhang, Y; Drautz, D; Giardine, B; Schuster, Sc; Miller, W; Chiaromonte, Francesca; Zhang, Yu; Blobel, Ga; Weiss, Mj; Hardison, Rc
ESPERR: Learning strong and weak signals in genomic sequence alignments to identify functional elements 1-gen-2006 Taylor, J; Tyekucheva, S; King, Dc; Hardison, Rc; Miller, W; Chiaromonte, Francesca
Evaluation of regulatory potential and conservation scores for detecting cis-regulatory modules in aligned mammalian genome sequences 1-gen-2005 King, Dc; Taylor, J; Elnitski, L; Chiaromonte, Francesca; Miller, W; Hardison, Rc
Experimental validation of predicted mammalian erythroid cis-regulatory modules 1-gen-2006 Wang, H; Zhang, Y; Petrykowska, H; Cheng, Y; Zhou, Y; King, D; Kasturi, J; Taylor, J; Chiaromonte, Francesca; Miller, W; Welch, J; Weiss, Mj; Hardison, Rc
Finding cis-regulatory modules using comparative genomics: some lessons from ENCODE data 1-gen-2007 King, Dc; Taylor, J; Zhang, Y; Cheng, Y; Lawson, Ha; Martin, J; ENCODE groups for Transcriptional, Regulation; Multispecies, Alignment; Chiaromonte, Francesca; Miller, W; Hardison, Rc
Gene length and proximity to neighbors affect genome-wide expression levels 1-gen-2003 Chiaromonte, Francesca; Miller, W; Bouhassira, E.
Genome-Wide Analysis of Common Fragile Sites: What Features determine chromosomal instability in the human genome? 1-gen-2012 Fungtammasan, A; Walsh, E; Chiaromonte, Francesca; Eckert, Ka; Makova, Kd
The genome-wide determinants of microsatellite evolution 1-gen-2008 Kelkar, Y; Tyekucheva, S; Chiaromonte, Francesca; Makova, Kd
Insertions and deletions are male-biased too: a whole-genome analysis in rodents 1-gen-2004 Makova, Kd; Yang, S; Chiaromonte, Francesca
Long-read sequencing technology indicates genome-wide effects of non-B DNA on polymerization speed and error rate 1-gen-2018 Guiblet, Wilfried M.; Cremona, Marzia A.; Cechova, Monika; Harris, Robert S.; Kejnovská, Iva; Kejnovsky, Eduard; Eckert, Kristin; Chiaromonte, Francesca; Makova, Kateryna D.
A matter of life and death: how microsatellites emerge in and vanish from the human genome 1-gen-2011 Kelkar, Yd; Eckert, Ka; Chiaromonte, Francesca; Makova, Kd
Patterns of insertions and their covariation with substitutions in the rat, mouse and human genomes 1-gen-2004 Yang, S; Smit, Af; Schwartz, S; Chiaromonte, Francesca; Roskin, Km; Haussler, D; Miller, W; Hardison, Rc
Regulatory potential scores from genome-wide 3-way alignments of human, mouse and rat 1-gen-2004 Kolbe, D; Taylor, J; Elnitski, L; Eswara, P; Li, J; Miller, W; Hardison, Rc; Chiaromonte, Francesca
Ride the wavelet: a multi-scale analysis of genomic context flanking small insertions and deletions 1-gen-2009 Kvikstad, Em; Chiaromonte, Francesca; Makova, Kd
Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif 1-gen-2008 Cheng, Y.; King, D. C.; Dore, L. C.; Zhang, X.; Zhou, Y.; Zhang, Y; Dorman, C; Abebe, D; Kumar, S; Chiaromonte, Francesca; Miller, W; Green, Rd; Weiss, Mj; Hardison, Rc
Windshield splatter analysis with the Galaxy metagenomic pipeline 1-gen-2009 Kosakovsky Pond, S; Wadhawan, S; Chiaromonte, Francesca; Ananda, G; Chung, Wy; Taylor, J; Nekrutenko, A; the Galaxy, Team
Mostrati risultati da 1 a 19 di 19
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